Performance assessment of ontology matching systems for FAIR data

Table 5 Evaluation results of the whole ontologies. Shown is the mean precision/recall/F1-score for both the UMLS and BioPortal. The scores for the ontology pairs indicate the mean of all matching systems, the scores for the matching systems indicate the mean of all ontology pairs

Pair or matching system	Precision UMLS	Precision BioPortal	Recall UMLS	Recall BioPortal	F1-score UMLS	F1-score BioPortal
ORDO - SNOMED CT	0.45	0.28	0.66	0.89	0.53	0.42
NCIt - ORDO	0.33	0.44	0.67	0.91	0.43	0.58
NCIt - SNOMED CT	0.55	0.67	0.66	0.94	0.60	0.78
AgreementMakerLight 2.0	0.47	0.54	0.66	0.96	0.55	0.66
FCA-Map	0.39	0.39	0.64	0.90	0.46	0.53
LogMap 2.0	0.47	0.45	0.69	0.88	0.55	0.58

ISSN: 2041-1480