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Table 8 Toxin identification on testing set

From: Classifying literature mentions of biological pathogens as experimentally studied using natural language processing

Term

TP

Positives

FP + TP

Precision

Recall

F1

enterotoxins

8477

25,679

8490

0.9985

0.3301

0.4962

saxitoxins

909

1270

980

0.9279

0.7157

0.8080

tetrodotoxins

7944

12,848

8109

0.9797

0.6183

0.7581

Regex

TP

Positives

FP + TP

Precision

Recall

F1

enterotoxins

8504

25,679

8517

0.9985

0.3312

0.4974

saxitoxins

939

1270

1012

0.9279

0.7394

0.8230

tetrodotoxins

7958

12,848

8123

0.9797

0.6194

0.7590