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Table 3 Automatically generated domain: services in the HMMER subset.

From: Semantics-based composition of EMBOSS services

Service Input Types Output Types
edialign sequence_record edialign_seqoutall_output, edialign_output
ehmmalign protein _sequence_record, hmmer_hidden_markov_model ehmmalign_align_output
ehmmbuild protein_sequence_alignment_data hmm
ehmmcalibrate hmmer_hidden_markov_model hmmer.histogram, hmmcalibrate_output
ehmmconvert hmmer_hidden_markov_model hmm
ehmmemit hmmer_hidden_markov_model hmmemit_output
ehmmfetch hmmer_hidden_markov_model_identifier, hmmer_hidden_markov_model_database hmm
ehmmindex hmmer_hidden_markov_model_database  
ehmmpfam protein jsequence_record, hmmer_hidden_markov_model hmmpfam_output
ehmmsearch protein _sequence_record, hmmer_hidden_markov_model hmmsearch_output
emma sequence_record emma_seqoutset_output, dendrogram
makenucseq - makenucseq_seqoutall_output
makeprotseq - makeprotseq_seqoutall_output
showalign sequence _alignment_data showalign_output
showfeat sequence_record showfeat_output
showpep proteinjsequence_record showpep_output
showseq dna_sequence_record showseq_output
  1. This table shows the automatically derived input and output descriptions for the services in the HMMER subset of the EMBOSS domain.