Table 3 Automatically generated domain: services in the HMMER subset.
Service | Input Types | Output Types |
|---|---|---|
edialign | sequence_record | edialign_seqoutall_output, edialign_output |
ehmmalign | protein _sequence_record, hmmer_hidden_markov_model | ehmmalign_align_output |
ehmmbuild | protein_sequence_alignment_data | hmm |
ehmmcalibrate | hmmer_hidden_markov_model | hmmer.histogram, hmmcalibrate_output |
ehmmconvert | hmmer_hidden_markov_model | hmm |
ehmmemit | hmmer_hidden_markov_model | hmmemit_output |
ehmmfetch | hmmer_hidden_markov_model_identifier, hmmer_hidden_markov_model_database | hmm |
ehmmindex | hmmer_hidden_markov_model_database | Â |
ehmmpfam | protein jsequence_record, hmmer_hidden_markov_model | hmmpfam_output |
ehmmsearch | protein _sequence_record, hmmer_hidden_markov_model | hmmsearch_output |
emma | sequence_record | emma_seqoutset_output, dendrogram |
makenucseq | - | makenucseq_seqoutall_output |
makeprotseq | - | makeprotseq_seqoutall_output |
showalign | sequence _alignment_data | showalign_output |
showfeat | sequence_record | showfeat_output |
showpep | proteinjsequence_record | showpep_output |
showseq | dna_sequence_record | showseq_output |