Dietrich Rebholz-Schuhmann, University of Cologne, Germany
Robert Hoehndorf, King Abdullah University of Science and Technology, Saudi Arabia
Editors-in-Chief
Aims and scope
Journal of Biomedical Semantics addresses issues of semantic enrichment and semantic processing in the biomedical and clinical domain. The scope of the journal covers two main areas:
Infrastructure for biomedical semantics: focusing on semantic resources and repositories, ontology design, meta-data standards and management, resource description, knowledge representation and semantic frameworks, the Biomedical Semantic Web, and semantic interoperability.
Semantic mining, annotation, and analysis: focusing on approaches and applications of semantic resources; and tools for investigation, reasoning, prediction, artificial intelligence modelling, and discoveries in biomedicine.
Open Collections
2023
Ontologies for Infectious and Immune-Mediated Disease Data Science
Journal of Biomedical Semantics
Edited by: Asiyah Yu Lin, Alexander Diehl, John Beverley & Lindsay G. Cowell
Vaccine and Drug Ontologies 2023 (Call for papers)
Journal of Biomedical Semantics
Edited by: Yongqun Oliver He, Cui Tao & Junguk Hur
2022
International Society of Molecular Biology (ISMB) Bio-Ontologies Community of Special Interest
Journal of Biomedical Semantics
Edited by: Tiffany Callahan & Maxat Kulmanov
2021
Data and Research Objects Planning and Management for Linked Open Science (DaMaLOS)
Journal of Biomedical Semantics
Edited by: Leyla Jael Garcia-Castro & Oya Deniz Beyan
2020
International Conference on Biomedical Ontologies (ICBO)
Journal of Biomedical Semantics
Edited by: Stefan Schulz & Amanda Damasceno de Souza
Articles
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Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments
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Automatic transparency evaluation for open knowledge extraction systems
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Multi-domain knowledge graph embeddings for gene-disease association prediction
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An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows
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The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
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Semantic querying of relational data for clinical intelligence: a semantic web services-based approach
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Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
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The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation
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MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank
Current Open Calls-for-Papers
Journal of Biomedical Semantics welcomes Collections/Thematic Series in emerging and hot topics, relevant to the aims and scope of the journal. Collections can also originate from well-established and upcoming conferences or focus on the research legacy of a pioneer in the field as well.
You can view all present and past collections by following the "Collections" link in the header at the top of the page. The journal's currently open Calls-for-Papers can be seen here or by following the link in the right-hand sidebar toward the top of this page.
Annual Journal Metrics
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2022 Citation Impact
1.9 - 2-year Impact Factor
2.6 - 5-year Impact Factor
0.870 - SNIP (Source Normalized Impact per Paper)
0.697 - SJR (SCImago Journal Rank)2022 Speed
20 days submission to first editorial decision for all manuscripts (Median)
363 days submission to accept (Median)2022 Usage
248,663 downloads
3,363 Altmetric mentions