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Table 1 Semantic templates for target events

From: Improving the extraction of complex regulatory events from scientific text by using ontology-based inference

Semantic template Gene Ontology concept
<RegulationOfGeneExpression hasAgent=?Protein
  hasPatient=<GeneExpression hasPatient=?Gene>>
Regulation of gene expression
(GO:0010468)
<RegulationOfTranscription hasAgent=?Protein
  hasPatient=<Transcription hasPatient=?Gene>>
Regulation of transcription
(GO:0045449)
<BindingOfTFToTFBindingSiteOfDNA
  hasAgent=?TranscriptionFactor
  hasPatient=<RegulatoryDNARegion hasPatient=?Gene>>
Transcription factor binding
(GO:0008134)
<RegulatoryProcess hasAgent=?MolecularEntity
  hasPatient=<CellGrowth hasAgent=?Cell>>
Regulation of cell growth
(GO:0001558)
<RegulatoryProcess hasAgent=?MolecularEntity
  hasPatient=<CellDeath hasAgent=?Cell>>
Regulation of cell killing
(GO:0031341)