Journal of Biomedical Semantics

Table 7 Evaluation of performance increase of gold probability

From: Ranking relations between diseases, drugs and genes for a curation task

PharmGKB data set
setting	mean	sd	Δ	Δabs	Δrel	p value	ΔCI_l	Δrel_bs
t-m1-n0-c0-s0	0.85	0.003
t-m1-n0-c0-s1	0.89	0.002	s1	+0.031	+3.7	9.8_-4	+0.030	+3.7
tmc-m1-n0-c0-s1	0.90	0.002	tmc	+0.016	+1.8	9.8_-4	+0.015	+5.5
tmc-m1-n3-c0-s1	0.91	0.002	n3	+0.009	+1.0	9.8_-4	+0.008	+6.5
tmc-m1-n3-c9-s1	0.91	0.002	c9	+0.000	+0.0	3.5_-1	+0.000	+6.5
CTD data set
setting	mean	sd	Δ	Δabs	Δrel	p value	ΔCI _l	Δrel _bs
t-m1-n0-c0-s0	0.91	0.001
t-m1-n0-c0-s1	0.94	0.000	s1	+0.028	+3.0	9.8_-4	+0.027	+3.0
t-m1-n3-c0-s1	0.95	0.001	n3	+0.010	+1.1	9.8_-4	+0.010	+4.2
tm-m1-n3-c0-s1	0.95	0.001	tm	+0.005	+0.5	9.8_-4	+0.005	+4.7
tm-m1-n3-c6-s1	0.95	0.001	c6	+0.000	+0.0	1.2_-1	+0.000	+4.7
tmc-m1-n3-c6-s1	0.95	0.001	tmc	+0.000	+0.0	5.0_-1	+0.000	+4.7
tmc-m1-n3-c9-s1	0.95	0.001	c9	+0.000	+0.0	3.8_-1	+0.000	+4.7

This table gives the corresponding overview of feature-wise performance increase as Table 4. See Table 4 for a detailed explanation on the interpretation of the columns. The performance of the gold probability shows the quality of the Maximum Entropy approach for the estimation of an entity being part of a relation from the gold standard.

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