TopFed: TCGA tailored federated query processing and linking to LOD

Table 3 Excerpt of the links for the methylation results of a single patient

Source	Target	Class	# links	Runtime (ms)
Methylation	HGNC	Chromosomes	97,530	205
Methylation	OMIM	Chromosomes	14,407,269	6,095
Gene expression	HGNC	Chromosomes	86,052	80
Gene expression	OMIM	Chromosomes	12,535,829	4,679

The source column shows the name of the patient file that was linked to the target dataset named in the second column. The class column shows the type of resources that were linked. The fourth column shows the number of links that were generated while the runtime column shows the time required by LIMES to carry out the linking process in ms.

ISSN: 2041-1480