Journal of Biomedical Semantics

Table 4 Extracted features for thematic test sets, methods and feature size

From: Annotation-based feature extraction from sets of SBML models

5 Features	Method 2				Method 4
	CC	APOP	CA	NFKB	CC	APOP	CA	NFKB
	8152	3674	3674	3674	22411	5515	5217	5515
	9987	5575	9987	8152	30163	30693	5829	6886
GO	44699	8152	44699	9987	51726	44257	6816	22607
	65007	9987	51234	44699	65009	65003	15085	44257
	71840	71840	65007	71840	71822	71822	51480	71822
*avg depth*	2.0	1.6	1.8	1.8	4.4	4.2	8.2	4.6
15 Features	Method 2				Method 4
	CC	APOP	CA	NFKB	CC	APOP	CA	NFKB
	3674	3824	3824	3674	216	2090	5217	5515
	5575	5488	4872	5575	4693	5575	5783	5634
	6807	5575	5215	6807	5575	16265	5829	6886
	9056	9056	5488	9056	22411	30693	6816	16563
	9058	9987	5575	9058	30163	31264	15085	22607
	40007	30234	7204	44237	32268	43027	17111	44257
	44237	32501	22411	44238	45750	44257	38023	71822
GO	44238	44238	32469	44699	51726	65003	51480
	44699	44699	44237	44710	65009	71822
	50896	50896	50789	50896	71822
	51234	51234	51234	51234
	65007	65007	51481	65007
	71704	71704	51716	71704
	71840	71840	60089	71840
			65009
*avg depth*	2.2	2.1	4.0	2.4	4.1	4.2	7.0	4.3

The upper table shows a maximum of five features, the bottom table a maximum of 15 features, respectively. IDs are shortened (e.g. GO:00003674 is represented by 3674) and ordered ascending (Additional file 3).

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ISSN: 2041-1480

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