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Fig. 1 | Journal of Biomedical Semantics

Fig. 1

From: Dead simple OWL design patterns

Fig. 1

DOS-DP for defining classes of transmembrane import (based on an example from the GO.) Panel A shows the DOS-DP using the OBO extension. Panel B shows the same pattern expressed using the core specification (classes, relations and vars fields omitted from panel B for brevity). In Panel A, annotations are specified using dedicated fields (def, name, xrefs). The mapping from these to OWL annotation properties is specified in the OBO extension schema. This mapping is made explicit in Panel B, using an annotation_property dictionary and the annotationProperty field in axiom specifications under annotations. Throughout both versions of the pattern, paired fields text and vars specify printf text and fillers respectively. The value field is used with the data_list_var def_xrefs to specify a list database_cross_reference annotations on the definition

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