Table 6 Databases used for experiment 1
From: NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation
Database name | Acronym | Topic | Source field | Type |
|---|---|---|---|---|
ARRS GoldMiner | GM | Biomedical images | Image caption | Text |
Autism Database (AutDB) | AUTDB | Autism spectrum disorders | Phenotype profile | Text |
Gene Expression Omnibus | GEO | Gene expression | Summary | Text |
Integrated Disease View | IDV | Disease and treatment | Description | Text |
PubMed | PM | Biomedicine | Abstract | Text |
PubMed Health Drugs | PMH | Drugs | Why is this medication prescribed? | Text |
Adverse Event Reporting System | AERS | Adverse events | Adverse reactions | Keywords |
AgingGenesDB | AGDB | Aging related genes | Keywords | Keywords |
ClinicalTrials.gov | CT | Clinical trials | Condition | Keywords |
DrugBank | DBK | Drugs | Drug category | Keywords |
PharmGKB-Gene | PGGE | Relationships about drugs, diseases and genes | Gene related diseases | Keywords |
UniProt KB | UPKB | Proteins | Biological processes | Keywords |