Table 3 Evaluation of AML’s full matching pipeline with the StringMatcher run locally and run globally
From: Tackling the challenges of matching biomedical ontologies
Task | Local StringMatcher | Global StringMatcher | ||||||
|---|---|---|---|---|---|---|---|---|
| Â | Prc | Rec | F-m | Time (s) | Prc | Rec | F-m | Time (s) |
Anatomy | 95.0% | 93.6% | 94.3% | 0.74 | 94.1% | 93.5% | 93.8% | 141 |
FMA-NCI small | 95.8% | 91.0% | 93.3% | 0.36 | 95.1% | 91.5% | 93.2% | 164 |
FMA-SNOMED small | 92.3% | 76.2% | 83.5% | 0.85 | 88.2% | 79.7% | 83.8% | 796 |
SNOMED-NCI small | 91.4% | 73.6% | 81.6% | 9.7 | 86.1% | 75.5% | 80.5% | 5010 |