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Table 3 Evaluation of AML’s full matching pipeline with the StringMatcher run locally and run globally

From: Tackling the challenges of matching biomedical ontologies

Task Local StringMatcher Global StringMatcher
  Prc Rec F-m Time (s) Prc Rec F-m Time (s)
Anatomy 95.0% 93.6% 94.3% 0.74 94.1% 93.5% 93.8% 141
FMA-NCI small 95.8% 91.0% 93.3% 0.36 95.1% 91.5% 93.2% 164
FMA-SNOMED small 92.3% 76.2% 83.5% 0.85 88.2% 79.7% 83.8% 796
SNOMED-NCI small 91.4% 73.6% 81.6% 9.7 86.1% 75.5% 80.5% 5010
  1. Precision (Prc), Recall (Rec), and F-measure (F-m) of the alignment produced by each strategy, and execution time of the StringMatcher algorithm