Table 5 Comparison between AML’s full matching pipeline with and without the use of Lexicon weights to score the mappings
From: Tackling the challenges of matching biomedical ontologies
Task | Lexicon weights | No Lexicon weights | ||||
|---|---|---|---|---|---|---|
| Â | Precision | Recall | F-measure | Precision | Recall | F-measure |
Anatomy | 95.0% | 93.6% | 94.3% | 81.3% | 95.8% | 88.0% |
FMA-NCI small | 95.8% | 91.0% | 93.3% | 94.6% | 91.1% | 92.8% |
FMA-SNOMED small | 92.3% | 76.2% | 83.5% | 90.9% | 77.3% | 83.5% |
SNOMED-NCI small | 91.4% | 73.6% | 81.6% | 89.9% | 74.1% | 81.2% |
FMA-NCI whole | 83.8% | 87.2% | 85.5% | 78.3% | 86.4% | 82.2% |
FMA-SNOMED whole | 88.0% | 69.0% | 77.4% | 84.4% | 70.3% | 76.7% |
SNOMED-NCI whole | 89.7% | 67.1% | 76.8% | 86.4% | 67.1% | 75.6% |