Table 7 Evaluation of AML’s matching pipeline in the Anatomy and FMA-NCI small tasks with different combinations of background knowledge information source (lexical vs. cross-references) and usage strategies (mediator vs. lexical expansion)
From: Tackling the challenges of matching biomedical ontologies
Task | BK info | BK usage | Precision | Recall | F-measure |
|---|---|---|---|---|---|
Anatomy | Lexical | Mediator | 94.8% | 91.0% | 92.9% |
| Â | (1365-1352) | Expansion | 94.6% | 90.2% | 92.4% |
| Â | Cross-refs | Mediator | 93.4% | 92.5% | 93.0% |
| Â | (1389-1401) | Expansion | 95.0% | 93.6% | 94.3% |
FMA-NCI small | Lexical | Mediator | 93.9% | 91.7% | 92.8% |
| Â | (1624-1598) | Expansion | 93.6% | 91.5% | 92.5% |
| Â | Cross-refs | Mediator | 95.8% | 91.0% | 93.3% |
| Â | (1541-1559) | Expansion | 94.2% | 92.0% | 93.1% |