Matching biomedical ontologies based on formal concept analysis

Table 18 Comparing FCA-Map with the OAEI 2016 top-ranked systems

Matching task		XMap	AML	LogMap	LogMapBio	FCA-Map
Conference	Precision	0.85	0.84	0.82	0.77	0.75
	Recall	0.57	0.66	0.59	0.56	0.52
	F-Measure	0.68	0.74	0.69	0.65	0.61
MA-NCI	Precision	0.929	0.95	0.918	0.888	0.932
	Recall	0.865	0.936	0.846	0.896	0.837
	F-Measure	0.896	0.943	0.88	0.892	0.882
FMA-NCI	Precision	0.977	0.936	0.949	0.935	0.954
	Recall	0.901	0.902	0.901	0.910	0.917
	F-Measure	0.937	0.931	0.924	0.923	0.935
FMA-SNOMED	Precision	0.989	0.953	0.948	0.944	0.936
	Recall	0.846	0.727	0.690	0.696	0.803
	F-Measure	0.912	0.825	0.799	0.801	0.865
SNOMED-NCI	Precision	0.911	0.904	0.922	0.896	0.914
	Recall	0.564	0.713	0.663	0.675	0.666
	F-Measure	0.697	0.797	0.771	0.770	0.771
FMA-NCI Whole	Precision	0.902	0.838	0.854	0.818	0.409
	Recall	0.847	0.872	0.802	0.835	0.872
	F-Measure	0.874	0.855	0.827	0.826	0.557
FMA-SNOMED Whole	Precision	0.965	0.882	0.839	0.808	0.452
	Recall	0.843	0.687	0.634	0.640	0.773
	F-Measure	0.900	0.773	0.722	0.714	0.571
SNOMED-NCI Whole	Precision	−	0.904	0.870	0.842	0.786
	Recall	−	0.668	0.596	0.637	0.686
	F-Measure	−	0.768	0.708	0.725	0.732
HP-MP vote 2	Precision	1.000	0.931	0.935	0.918	0.984
	Recall	0.333	0.800	0.913	0.932	0.754
	F-Measure	0.500	0.860	0.924	0.925	0.854
HP-MP vote 3	Precision	1.000	0.854	0.773	0.755	0.942
	Recall	0.435	0.945	0.973	0.982	0.924
	F-Measure	0.606	0.897	0.862	0.854	0.933
DOID-ORDO vote 2	Precision	0.985	0.853	0.952	0.920	0.966
	Recall	0.569	0.971	0.878	0.898	0.959
	F-Measure	0.721	0.908	0.913	0.909	0.962
DOID-ORDO vote 3	Precision	0.977	0.778	0.905	0.864	0.888
	Recall	0.632	0.998	0.938	0.949	0.993
	F-Measure	0.767	0.878	0.921	0.905	0.937

ISSN: 2041-1480