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Table 8 Detailed evaluation of system labelling compared to Annotator 2 showing numbers of true positives (TP), false positives (FP) and false negatives (FP), as well as precision, recall and F1

From: Text mining brain imaging reports

Type

TP

FP

FN

Precision

Recall

F1

Ischaemic stroke, deep, recent

4

1

0

80.00

100.00

88.89

Ischaemic stroke, deep, old

81

5

4

94.19

95.29

94.74

Ischaemic stroke, cortical, recent

14

1

2

93.33

87.50

90.32

Ischaemic stroke, cortical, old

56

5

8

91.80

87.50

89.60

Ischaemic stroke, underspecified

6

8

6

42.86

50.00

46.15

Haemorrhagic stroke, deep, recent

3

0

0

100.00

100.00

100.00

Haemorrhagic stroke, deep, old

4

1

0

80.00

100.00

88.89

Haemorrhagic stroke, lobar, recent

4

1

0

80.00

100.00

88.89

Haemorrhagic stroke, lobar, old

3

1

0

75.00

100.00

85.71

Haemorrhagic stroke, underspecified

9

3

0

75.00

100.00

85.71

Stroke, underspecified

13

1

2

92.86

86.67

89.66

Tumour, meningioma

4

1

0

80.00

100.00

88.89

Tumour, metastasis

0

3

0

0.00

-

-

Tumour, glioma

0

0

0

-

-

-

Tumour, other

4

2

1

66.67

80.00

72.73

Small vessel disease

158

0

3

100.00

98.14

99.06

Atrophy

120

3

8

97.56

93.75

95.62

Subdural haematoma

5

0

1

100.00

83.33

90.91

Subarachnoid haemorrhage, aneurysmal

0

0

0

-

-

-

Subarachnoid haemorrhage, other

4

1

3

80.00

57.14

66.67

Microbleed, deep

1

0

1

100.00

50.00

66.67

Microbleed, lobar

1

0

0

100.00

100.00

100.00

Microbleed, underspecified

0

2

0

0.00

-

-

Haemorrhagic transformation

1

0

1

100.00

50.00

66.67

TOTAL

495

39

40

92.70

92.52

92.61