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Table 4 Data properties

From: An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD)

Data property

Corresponding class

Explanation

ConditionDoId, ConditionDoValue, ConditionMeshId, ContitionName, ConditionFdaUse, ConditionComment

Condition

• ConditionDoId: Mapped Disease Ontology ID;

• ConditionMeshId: Mapped MeSH ID

gard_id,

Categories, is_rare, name, synonyms, xrefs, Sign and symptom, Treatment, Diagnosis, etc.

GARD Rare Diseases

• is_rare: An indicator of “RARE” disease;

• xrefs: mappings to other resources, including MONDO, Orphanet;

CompoundName, CompoundSmiles, CAS, UNII, OfflabelUseComment

Drug

 

ID, Label, URI, IAO_0000115

Gene

• IAO_0000115: Definition of the concept

ID, IAO_0000115, Label, Synonym, uri,

Gene Symbol

Protein

• IAO_0000115: Definition of the concept

• Id: Protein Ontology identifier

IAO_0000115, hasDbXref, hasRelatedSynonym, label uri

Tissue

• IAO_0000115: Definition of the concept

• hasDbXref: external references

hasDbXref, IAO_0000115

id, label, uri

Human Phenotype

• Id: HPO identifier

Annotation properties and object properties are adopted from NCI Thesaurus

Chemical