Table 4 Details of the reference alignments. Shown are the number of mappings in the BioPortal and UMLS Metathesaurus reference alignments. Also shown are the overlap and harmonic mean of the overlap between the alignments. The harmonic mean was calculated by weighting the reference alignment means by the number of mappings in each reference alignment
From: Performance assessment of ontology matching systems for FAIR data
Ontology pair | Ontology type | Mappings UMLS | Mappings BioPortal | Overlap | Harmonic mean overlap |
|---|---|---|---|---|---|
ORDO-SNOMED CT | Module | 35 | 7 | 3 | 14% |
NCIt-ORDO | Module | 27 | 18 | 12 | 53% |
NCIt-SNOMED CT | Module | 127 | 90 | 56 | 52% |
ORDO-SNOMED CT | Whole ontology | 3,861 | 1,750 | 776 | 28% |
NCIt-ORDO | Whole ontology | 1,484 | 1,450 | 656 | 45% |
NCIt-SNOMED CT | Whole ontology | 19,309 | 16,290 | 10,195 | 57% |