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Volume 1 Supplement 1

Proceedings of the Bio-Ontologies Special Interest Group Meeting 2009: Knowledge in Biology


Edited by Larisa N Soldatova, Phillip Lord, Susanna-Assunta Sansone, Susie M Stephens and Nigam H Shah

Bio-Ontologies 2009: Knowledge in Biology. Go to conference site.

Stockholm, Sweden28 June 2009

  1. Content type: Proceedings

    Researchers in biomedical informatics use ontologies and terminologies to annotate their data in order to facilitate data integration and translational discoveries. As the use of ontologies for annotation of b...

    Authors: Clement Jonquet, Mark A Musen and Nigam H Shah

    Citation: Journal of Biomedical Semantics 2010 1(Suppl 1):S1

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  2. Content type: Proceedings

    Increasingly sophisticated knowledge about RNA structure and function requires an inclusive knowledge representation that facilitates the integration of independently –generated information arising from such e...

    Authors: Jose Cruz-Toledo, Michel Dumontier, Marc Parisien and François Major

    Citation: Journal of Biomedical Semantics 2010 1(Suppl 1):S2

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  3. Content type: Proceedings

    The creation of accurate quantitative Systems Biology Markup Language (SBML) models is a time-intensive, manual process often complicated by the many data sources and formats required to annotate even a small ...

    Authors: Allyson L Lister, Phillip Lord, Matthew Pocock and Anil Wipat

    Citation: Journal of Biomedical Semantics 2010 1(Suppl 1):S3

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  4. Content type: Proceedings

    Understanding the distinction between function and role is vexing and difficult. While it appears to be useful, in practice this distinction is hard to apply, particularly within biology.

    Authors: Phillip Lord

    Citation: Journal of Biomedical Semantics 2010 1(Suppl 1):S4

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  5. Content type: Proceedings

    Information technology has the potential to increase the pace of scientific progress by helping researchers in formulating, publishing and finding information. There are numerous projects that employ ontologie...

    Authors: Matthias Samwald and Holger Stenzhorn

    Citation: Journal of Biomedical Semantics 2010 1(Suppl 1):S5

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  6. Content type: Proceedings

    CiTO, the Citation Typing Ontology, is an ontology for describing the nature of reference citations in scientific research articles and other scholarly works, both to other such publications and also to Web in...

    Authors: David Shotton

    Citation: Journal of Biomedical Semantics 2010 1(Suppl 1):S6

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  7. Content type: Proceedings

    Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data e...

    Authors: Ryan R Brinkman, Mélanie Courtot, Dirk Derom, Jennifer M Fostel, Yongqun He, Phillip Lord, James Malone, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N Soldatova, Christian J Stoeckert Jr., Jessica A Turner and Jie Zheng

    Citation: Journal of Biomedical Semantics 2010 1(Suppl 1):S7

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