Volume 1 Supplement 1

Proceedings of the Bio-Ontologies Special Interest Group Meeting 2009: Knowledge in Biology


Edited by Larisa N Soldatova, Phillip Lord, Susanna-Assunta Sansone, Susie M Stephens and Nigam H Shah

Bio-Ontologies 2009: Knowledge in Biology. Go to conference site.

Stockholm, Sweden

28 June 2009

  1. Proceedings

    Building a biomedical ontology recommender web service

    Researchers in biomedical informatics use ontologies and terminologies to annotate their data in order to facilitate data integration and translational discoveries. As the use of ontologies for annotation of b...

    Clement Jonquet, Mark A Musen and Nigam H Shah

    Journal of Biomedical Semantics 2010 1(Suppl 1):S1

    Published on: 22 June 2010

  2. Proceedings

    RKB: a Semantic Web knowledge base for RNA

    Increasingly sophisticated knowledge about RNA structure and function requires an inclusive knowledge representation that facilitates the integration of independently –generated information arising from such e...

    Jose Cruz-Toledo, Michel Dumontier, Marc Parisien and François Major

    Journal of Biomedical Semantics 2010 1(Suppl 1):S2

    Published on: 22 June 2010

  3. Proceedings

    Annotation of SBML models through rule-based semantic integration

    The creation of accurate quantitative Systems Biology Markup Language (SBML) models is a time-intensive, manual process often complicated by the many data sources and formats required to annotate even a small ...

    Allyson L Lister, Phillip Lord, Matthew Pocock and Anil Wipat

    Journal of Biomedical Semantics 2010 1(Suppl 1):S3

    Published on: 22 June 2010

  4. Proceedings

    An evolutionary approach to Function

    Understanding the distinction between function and role is vexing and difficult. While it appears to be useful, in practice this distinction is hard to apply, particularly within biology.

    Phillip Lord

    Journal of Biomedical Semantics 2010 1(Suppl 1):S4

    Published on: 22 June 2010

  5. Proceedings

    CiTO, the Citation Typing Ontology

    CiTO, the Citation Typing Ontology, is an ontology for describing the nature of reference citations in scientific research articles and other scholarly works, both to other such publications and also to Web in...

    David Shotton

    Journal of Biomedical Semantics 2010 1(Suppl 1):S6

    Published on: 22 June 2010

  6. Proceedings

    Modeling biomedical experimental processes with OBI

    Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data e...

    Ryan R Brinkman, Mélanie Courtot, Dirk Derom, Jennifer M Fostel, Yongqun He, Phillip Lord, James Malone, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N Soldatova, Christian J Stoeckert Jr., Jessica A Turner and Jie Zheng

    Journal of Biomedical Semantics 2010 1(Suppl 1):S7

    Published on: 22 June 2010