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Volume 2 Supplement 2

Proceedings of the Bio-Ontologies Special Interest Group Meeting 2010

Proceedings

Edited by Larisa Soldatova, Susanna-Assunta Sansone, Susie Stephens and Nigam H Shah

Bio-Ontologies 2010: Semantic Applications in Life Sciences. Go to conference site.

Boston, MA, USA9-10 July 2010

  1. Content type: Introduction

    Over the years, the Bio-Ontologies SIG at ISMB has provided a forum for discussion of the latest and most innovative research in the application of ontologies and more generally the organisation, presentation ...

    Authors: Larisa N Soldatova, Susanna-Assunta Sansone, Susie M Stephens and Nigam H Shah

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):I1

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  2. Content type: Proceedings

    Translational medicine requires the integration of knowledge using heterogeneous data from health care to the life sciences. Here, we describe a collaborative effort to produce a prototype Translational Medici...

    Authors: Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, Timothy Lebo, Scott M Marshall, James P McCusker…

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S1

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  3. Content type: Proceedings

    Ontologies in biomedicine facilitate information integration, data exchange, search and query of biomedical data, and other critical knowledge-intensive tasks. The OBO Foundry is a collaborative effort to esta...

    Authors: Amir Ghazvinian, Natalya F Noy and Mark A Musen

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S2

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  4. Content type: Proceedings

    Key to the success of e-Science is the ability to computationally evaluate expert-composed hypotheses for validity against experimental data. Researchers face the challenge of collecting, evaluating and integr...

    Authors: Alison Callahan, Michel Dumontier and Nigam H Shah

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S3

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  5. Content type: Proceedings

    There is currently a gap between the rich and expressive collection of published biomedical ontologies, and the natural language expression of biomedical papers consumed on a daily basis by scientific research...

    Authors: Paolo Ciccarese, Marco Ocana, Leyla Jael Garcia Castro, Sudeshna Das and Tim Clark

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S4

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  6. Content type: Proceedings

    Text definitions for entities within bio-ontologies are a cornerstone of the effort to gain a consensus in understanding and usage of those ontologies. Writing these definitions is, however, a considerable eff...

    Authors: Robert Stevens, James Malone, Sandra Williams, Richard Power and Allan Third

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S5

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  7. Content type: Proceedings

    The realm of pathological entities can be subdivided into pathological dispositions, pathological processes, and pathological structures. The latter are the bearer of dispositions, which can then be realized b...

    Authors: Stefan Schulz, Kent Spackman, Andrew James, Cristian Cocos and Martin Boeker

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S6

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  8. Content type: Proceedings

    Chronic renal disease is a global health problem. The identification of suitable biomarkers could facilitate early detection and diagnosis and allow better understanding of the underlying pathology. One of the...

    Authors: Simon Jupp, Julie Klein, Joost Schanstra and Robert Stevens

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S7

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  9. Content type: Proceedings

    Interferon-gamma (IFN-γ) is vital in vaccine-induced immune defense against bacterial and viral infections and tumor. Our recent study demonstrated the power of a literature-based discovery method in extractio...

    Authors: Arzucan Özgür, Zuoshuang Xiang, Dragomir R Radev and Yongqun He

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S8

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  10. Content type: Proceedings

    Hypotheses are now being automatically produced on an industrial scale by computers in biology, e.g. the annotation of a genome is essentially a large set of hypotheses generated by sequence similarity programs; ...

    Authors: Larisa N Soldatova and Andrey Rzhetsky

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S9

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  11. Content type: Proceedings

    Advances in Natural Language Processing (NLP) techniques enable the extraction of fine-grained relationships mentioned in biomedical text. The variability and the complexity of natural language in expressing s...

    Authors: Adrien Coulet, Yael Garten, Michel Dumontier, Russ B Altman, Mark A Musen and Nigam H Shah

    Citation: Journal of Biomedical Semantics 2011 2(Suppl 2):S10

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