Volume 3 Supplement 1

Proceedings of the Bio-Ontologies Special Interest Group 2011

Proceedings

Edited by Larisa Soldatova, Susanna Sansone, Michel Dumontier and Nigam Shah

Bio-Ontologies 2011. Go to conference site.

Vienna, Austria

15-16 July 2011

  1. Introduction

    Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting

    Over the 14 years, the Bio-Ontologies SIG at ISMB has provided a forum for discussion of the latest and most innovative research in the bio-ontologies development, its applications to biomedicine and more gene...

    Larisa N Soldatova, Susanna-Assunta Sansone, Michel Dumontier and Nigam H Shah

    Journal of Biomedical Semantics 2012 3(Suppl 1):I1

    Published on: 24 April 2012

  2. Proceedings

    Open semantic annotation of scientific publications using DOMEO

    Our group has developed a useful shared software framework for performing, versioning, sharing and viewing Web annotations of a number of kinds, using an open representation model.

    Paolo Ciccarese, Marco Ocana and Tim Clark

    Journal of Biomedical Semantics 2012 3(Suppl 1):S1

    Published on: 24 April 2012

  3. Proceedings

    A Maximum-Entropy approach for accurate document annotation in the biomedical domain

    The increasing number of scientific literature on the Web and the absence of efficient tools used for classifying and searching the documents are the two most important factors that influence the speed of the ...

    George Tsatsaronis, Natalia Macari, Sunna Torge, Heiko Dietze and Michael Schroeder

    Journal of Biomedical Semantics 2012 3(Suppl 1):S2

    Published on: 24 April 2012

  4. Proceedings

    Towards valid and reusable reference alignments — ten basic quality checks for ontology alignments and their application to three different reference data sets

    Identifying relationships between hitherto unrelated entities in different ontologies is the key task of ontology alignment. An alignment is either manually created by domain experts or automatically by an ali...

    Elena Beisswanger and Udo Hahn

    Journal of Biomedical Semantics 2012 3(Suppl 1):S4

    Published on: 24 April 2012

  5. Proceedings

    Linking genes to diseases with a SNPedia-Gene Wiki mashup

    A variety of topic-focused wikis are used in the biomedical sciences to enable the mass-collaborative synthesis and distribution of diverse bodies of knowledge. To address complex problems such as defining the...

    Benjamin M Good, Erik L Clarke, Salvatore Loguercio and Andrew I Su

    Journal of Biomedical Semantics 2012 3(Suppl 1):S6

    Published on: 24 April 2012

  6. Proceedings

    OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia

    The OpenTox Framework, developed by the partners in the OpenTox project (http://​www.​opentox.​org), aims at providing a unified access to toxicity data, ...

    Olga Tcheremenskaia, Romualdo Benigni, Ivelina Nikolova, Nina Jeliazkova, Sylvia E Escher, Monika Batke, Thomas Baier, Vladimir Poroikov, Alexey Lagunin, Micha Rautenberg and Barry Hardy

    Journal of Biomedical Semantics 2012 3(Suppl 1):S7

    Published on: 24 April 2012

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